PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g101275.1
Common NameMTR_7g101275
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 406aa    MW: 46076.2 Da    PI: 8.0883
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g101275.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.61.7e-2192192198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g ++ p+ +ae +       g+++ +   +  +d +g++W +++ yr++++r++lt+GW+ Fv++++L +gD+vvF   ++
  Medtr7g101275.1  92 FAKTLTQSDANNGGGFSCPRYCAEMIfprmdysGNPPFQ--GIYPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSVVFL--RS 181
                      89*********************999******5544444..6************************************************..45 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++el+v++ r
  Medtr7g101275.1 182 ENGELRVGIWR 192
                      89999**9987 PP

2Auxin_resp93.33.9e-31219300283
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      ++  +++++F+vvY+Pr++t+eF vk++ +  +l++++++GmRfkm +etedss++++  Gtv++v+++dp +Wp+S Wr+L+
  Medtr7g101275.1 219 VRLGTNMQPFDVVYYPRSGTPEFFVKTSLIGITLQIRWCPGMRFKMPIETEDSSRISWfIGTVASVQAADP-SWPDSLWRLLQ 300
                      5667899****************************************************************.*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-3482196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-2787194IPR015300DNA-binding pseudobarrel domain
CDDcd100178.78E-1891190No hitNo description
PfamPF023627.0E-1992193IPR003340B3 DNA binding domain
PROSITE profilePS5086312.18292194IPR003340B3 DNA binding domain
SMARTSM010191.5E-1492194IPR003340B3 DNA binding domain
PfamPF065073.3E-23221300IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVQMPEVNSQ VFYFPQGHAE HACEPVNFSA YSKIPSFIPC RVEDIRYMAN HETDEVYAKL  60
RLVPMNINQV SFDNDGVAGI NVSETKDKHQ SFAKTLTQSD ANNGGGFSCP RYCAEMIFPR  120
MDYSGNPPFQ GIYPKDVHGE KWHFRHVYRG TPKRHLLTTG WSPFVSDKKL ASGDSVVFLR  180
SENGELRVGI WREKRRNNVG VVRVEIWGKV KVLEVIEAVR LGTNMQPFDV VYYPRSGTPE  240
FFVKTSLIGI TLQIRWCPGM RFKMPIETED SSRISWFIGT VASVQAADPS WPDSLWRLLQ  300
PSFQQPFNNI STMLMTLTNN SVLQKPNTSE NVCSHSISTS TQSLKKPDHA KPHQLVLFGQ  360
TIQIDAGNET SEKKMTNHLS DLHLQGLPTR SSDERFEWNP KNQCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-64130963376Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489950.0AC148995.2 Medicago truncatula chromosome 7 clone mth2-49l23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449988.10.0auxin response factor 1
SwissprotQ6K2231e-114ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A072U3R90.0A0A072U3R9_MEDTR; Auxin response factor
STRINGGLYMA19G36571.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-112auxin response factor 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]